Information for Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer (Motif 219)


Reverse Opposite:

p-value:2.013e-232
log p-value:-5.335e+02
Information Content per bp:1.757
Total Number of Sequences:49999.4
Total Number of Target Sequences:2592.0
Total Instances of Motif:1628.2
Total Instances of Motif in Targets:489.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TCATCAATCA
TCATCAATCA

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:TCATCAATCA-
-CATYAATCAT

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--TCATCAATCA
RGCCATYAATCA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-TCATCAATCA-
GYCATCMATCAT

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-TCATCAATCA
GCCATAAATCA

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:TCATCAATCA--
CCATCAATCAAA

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--TCATCAATCA
GGCCATAAATCA

PB0144.1_Lef1_2/Jaspar

Match Rank:8
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TCATCAATCA----
GAAGATCAATCACTTA

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TCATCAATCA
GGCCATAAATCA

Hoxc9/MA0485.1/Jaspar

Match Rank:10
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--TCATCAATCA-
GGCCATAAATCAC